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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3436Homologs of previously reported genes of unknown function. (313 aa)    
Predicted Functional Partners:
NIDE3434
Putative ABC transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.952
NIDE3435
ABC-type transport system, ATPase component; Function of strongly homologous gene; enzyme.
 
 
 
 0.897
NIDE3437
Conserved membrane protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 12107146.
 
     0.878
NIDE1351
Putative Type IV pilus assembly protein PilP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
     0.756
pilA
Type IV pilin PilA; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
     0.707
NIDE4094
Putative Type IV pilus assembly protein PilW; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
     0.665
pilA2
Type IV pilin PilA; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
    0.636
NIDE1349
Putative Type IV pilus biogenesis protein PilN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
     0.622
NIDE1350
Putative Type IV pilus biogenesis protein PilO; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
     0.599
pilM
Type IV pilus biogenesis protein PilM; Function of strongly homologous gene; structure.
 
     0.519
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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