Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3436Homologs of previously reported genes of unknown function. (313 aa)    
Predicted Functional Partners:
NIDE3434
Putative ABC transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.950
NIDE3435
ABC-type transport system, ATPase component; Function of strongly homologous gene; enzyme.
 
     0.894
NIDE3437
Conserved membrane protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 12107146.
 
     0.877
NIDE1351
Putative Type IV pilus assembly protein PilP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
     0.759
pilA
Type IV pilin PilA; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
   
 0.692
NIDE4094
Putative Type IV pilus assembly protein PilW; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
     0.665
pilA2
Type IV pilin PilA; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
     0.629
NIDE1349
Putative Type IV pilus biogenesis protein PilN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
     0.626
NIDE1350
Putative Type IV pilus biogenesis protein PilO; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
     0.599
pilM
Type IV pilus biogenesis protein PilM; Function of strongly homologous gene; structure.
 
     0.518
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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