STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3440Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15223324, 1882418, 7667876, 8722778, 9482716. (561 aa)    
Predicted Functional Partners:
NIDE1061
Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function.
 
     0.718
lpxC
UDP-3-O-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
 
 
 
 0.707
NIDE1962
Exported protein of unknown function, TPR-like; No homology to any previously reported sequences; 1882418, 7667876, 9482716.
 
 
 
 0.696
NIDE3180
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 1882418, 7667876, 9482716.
 
 
 
 0.598
NIDE1587
Protein of unknown function, putative Sensory histidine kinase with methyltransferase region; No homology to any previously reported sequences; 11369279, 11489844, 15009198, 16176121, 16622408, 18076326, 7699720, 9301332, 9382818.
 
 
 0.586
NIDE0308
Protein of unknown function, contains Ankyrin and Tetratricopeptide repeats; No homology to any previously reported sequences; 14659697, 7667876, 8108379, 9482716.
 
 0.579
NIDE1341
Exported protein of unknown function; No homology to any previously reported sequences; 7845226.
 
     0.577
NIDE3673
Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 15451670, 1882418, 7667876, 9482716.
  
     0.571
NIDE1580
Conserved exported protein of unknown function, putative LPS-assembly protein Imp; Homologs of previously reported genes of unknown function; 12724388, 16861298, 2547691, 7811102.
 
  
 0.563
NIDE3177
Protein of unknown function, contains DnaJ domain; No homology to any previously reported sequences; 12454054, 15170475, 8016869, 9644977.
    
 0.557
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.