STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
NIDE3456Putative Type I secretion membrane fusion protein HlyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (463 aa)    
Predicted Functional Partners:
hlyB
Type I secretion system ATPase HlyB; Function of strongly homologous gene; transporter.
 
 0.969
NIDE3454
Protein of unknown function, putative Hemolysin-type calcium-binding protein; No homology to any previously reported sequences; 12837794, 2303029, 8253063, 8797082, 8800842.
 
  
 0.907
NIDE3458
Protein of unknown function; No homology to any previously reported sequences.
       0.637
NIDE3455
Exported protein of unknown function; No homology to any previously reported sequences.
       0.605
NIDE3139
Putative Outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   0.585
NIDE2718
Putative Outer membrane efflux protein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   0.549
NIDE3240
Putative Multidrug resistance outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   0.515
NIDE3969
Putative ABC-type transport system, ATPase and permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.473
macC
ABC transporter, permease component, putative Macrolide export permease protein; Function of strongly homologous gene; transporter.
  
  
 0.464
NIDE3944
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.464
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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