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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3489Homologs of previously reported genes of unknown function. (366 aa)    
Predicted Functional Partners:
nirK
Copper-containing nitrite reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     0.916
NIDE2534
Putative Copper-containing nitrite reductase (NO-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
     0.846
NIDE3488
Homologs of previously reported genes of unknown function; 9600981.
 
   
 0.764
NIDE3490
Homologs of previously reported genes of unknown function.
       0.745
oprM
RND efflux system, outer membrane factor lipoprotein; Function of strongly homologous gene; transporter.
       0.595
NIDE3492
Homologs of previously reported genes of unknown function; 16826544.
       0.583
NIDE3493
Putative RND efflux system, multidrug resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.491
NIDE3487
Putative RNA polymerase ECF-type sigma factor containing TPR repeat; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the sigma-70 factor family.
       0.486
NIDE3494
Putative RND efflux system, membrane fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.468
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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