Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE3512Putative di-haem Cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (691 aa)    
Predicted Functional Partners:
NIDE3511
Putative Multicopper oxidase, type 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.818
NIDE0645
Conserved membrane protein of unknown function, containing PepSY-associated TM helices; Homologs of previously reported genes of unknown function.
  
     0.670
NIDE0662
Uncharacterized protein; Homologs of previously reported genes of unknown function; 15583150.
  
     0.644
NIDE2584
Conserved exported protein of unknown function DUF1597; Homologs of previously reported genes of unknown function.
  
     0.624
NIDE0644
TonB-dependent siderophore receptor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
    0.608
NIDE2177
Conserved membrane protein of unknown function, contains PepSY-associated TM helices; Homologs of previously reported genes of unknown function; 18511074.
  
     0.587
NIDE0659
TonB-dependent siderophore receptor; Function of strongly homologous gene; receptor.
  
     0.539
NIDE2155
Putative Penicillin amidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.498
NIDE0274
Homologs of previously reported genes of unknown function.
  
 
   0.495
NIDE3133
Homologs of previously reported genes of unknown function.
  
     0.493
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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