NIDE3523 protein (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NIDE3523

Homologs of previously reported genes of unknown function. (308 aa)

Predicted Functional Partners:

NIDE3522

0.773

NIDE3520

0.565

NIDE3521

0.565

NIDE1029

0.530

NIDE3524

0.488

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NIDE1029	NIDE3523	Putative Thiamine biosynthesis lipoprotein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	Homologs of previously reported genes of unknown function.	0.530
NIDE3520	NIDE3521	Sigma-54 dependent response regulator; Function of strongly homologous gene; regulator.	Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.842
NIDE3520	NIDE3522	Sigma-54 dependent response regulator; Function of strongly homologous gene; regulator.	Conserved protein of unknown function, contains PepSY-associated TM helices; Homologs of previously reported genes of unknown function.	0.565
NIDE3520	NIDE3523	Sigma-54 dependent response regulator; Function of strongly homologous gene; regulator.	Homologs of previously reported genes of unknown function.	0.565
NIDE3521	NIDE3520	Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Sigma-54 dependent response regulator; Function of strongly homologous gene; regulator.	0.842
NIDE3521	NIDE3522	Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved protein of unknown function, contains PepSY-associated TM helices; Homologs of previously reported genes of unknown function.	0.565
NIDE3521	NIDE3523	Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.565
NIDE3522	NIDE3520	Conserved protein of unknown function, contains PepSY-associated TM helices; Homologs of previously reported genes of unknown function.	Sigma-54 dependent response regulator; Function of strongly homologous gene; regulator.	0.565
NIDE3522	NIDE3521	Conserved protein of unknown function, contains PepSY-associated TM helices; Homologs of previously reported genes of unknown function.	Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.565
NIDE3522	NIDE3523	Conserved protein of unknown function, contains PepSY-associated TM helices; Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.773
NIDE3522	NIDE3524	Conserved protein of unknown function, contains PepSY-associated TM helices; Homologs of previously reported genes of unknown function.	Putative TonB-dependent Iron(III) dicitrate transport protein FecA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.488
NIDE3523	NIDE1029	Homologs of previously reported genes of unknown function.	Putative Thiamine biosynthesis lipoprotein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	0.530
NIDE3523	NIDE3520	Homologs of previously reported genes of unknown function.	Sigma-54 dependent response regulator; Function of strongly homologous gene; regulator.	0.565
NIDE3523	NIDE3521	Homologs of previously reported genes of unknown function.	Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.565
NIDE3523	NIDE3522	Homologs of previously reported genes of unknown function.	Conserved protein of unknown function, contains PepSY-associated TM helices; Homologs of previously reported genes of unknown function.	0.773
NIDE3523	NIDE3524	Homologs of previously reported genes of unknown function.	Putative TonB-dependent Iron(III) dicitrate transport protein FecA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.488
NIDE3524	NIDE3522	Putative TonB-dependent Iron(III) dicitrate transport protein FecA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Conserved protein of unknown function, contains PepSY-associated TM helices; Homologs of previously reported genes of unknown function.	0.488
NIDE3524	NIDE3523	Putative TonB-dependent Iron(III) dicitrate transport protein FecA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Homologs of previously reported genes of unknown function.	0.488