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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3565Putative Ferredoxin-thioredoxin reductase, catalytic subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (148 aa)    
Predicted Functional Partners:
fdx
2Fe-2S ferredoxin; Function of strongly homologous gene; carrier.
  
 
 0.872
fdxB
2Fe-2S ferredoxin; Function of strongly homologous gene; carrier.
   
 
 0.850
NIDE3566
Putative Peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.773
NIDE3564
Protein of unknown function, contains von Willebrand factor; No homology to any previously reported sequences; 8440408, 9759493.
       0.625
NIDE0052
Metallo-beta-lactamase superfamily hydrolase; Function of strongly homologous gene; enzyme.
  
     0.615
NIDE0505
Conserved protein of unknown function, DUF1499; Homologs of previously reported genes of unknown function.
  
    0.574
NIDE1052
Homologs of previously reported genes of unknown function.
  
     0.568
clpS
ATP-dependent Clp protease adapter protein ClpS; Function of strongly homologous gene; regulator; Belongs to the ClpS family.
  
    0.563
NIDE3563
Protein of unknown function; No homology to any previously reported sequences.
       0.542
nirA
Ferredoxin-nitrite reductase; Function of strongly homologous gene; enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
    0.472
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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