NIDE3572 protein (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NIDE3572

Homologs of previously reported genes of unknown function. (530 aa)

Predicted Functional Partners:

NIDE3573

0.617

NIDE3571

0.575

NIDE3570

0.509

kamA

0.446

dcd

0.432

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NIDE3570	NIDE3571	NIDE3570	NIDE3571	Putative Hybrid sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Protein of unknown function; No homology to any previously reported sequences.	0.821
NIDE3570	NIDE3572	NIDE3570	NIDE3572	Putative Hybrid sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.509
NIDE3570	NIDE3573	NIDE3570	NIDE3573	Putative Hybrid sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Glutaredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.	0.550
NIDE3571	NIDE3570	NIDE3571	NIDE3570	Protein of unknown function; No homology to any previously reported sequences.	Putative Hybrid sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.821
NIDE3571	NIDE3572	NIDE3571	NIDE3572	Protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.575
NIDE3571	NIDE3573	NIDE3571	NIDE3573	Protein of unknown function; No homology to any previously reported sequences.	Putative Glutaredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.	0.434
NIDE3572	NIDE3570	NIDE3572	NIDE3570	Homologs of previously reported genes of unknown function.	Putative Hybrid sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.509
NIDE3572	NIDE3571	NIDE3572	NIDE3571	Homologs of previously reported genes of unknown function.	Protein of unknown function; No homology to any previously reported sequences.	0.575
NIDE3572	NIDE3573	NIDE3572	NIDE3573	Homologs of previously reported genes of unknown function.	Putative Glutaredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.	0.617
NIDE3572	dcd	NIDE3572	NIDE3575	Homologs of previously reported genes of unknown function.	2'-deoxycytidine 5'-triphosphate deaminase; Function of strongly homologous gene; enzyme.	0.432
NIDE3572	kamA	NIDE3572	NIDE3574	Homologs of previously reported genes of unknown function.	L-lysine 2,3-aminomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.446
NIDE3573	NIDE3570	NIDE3573	NIDE3570	Putative Glutaredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.	Putative Hybrid sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.550
NIDE3573	NIDE3571	NIDE3573	NIDE3571	Putative Glutaredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.	Protein of unknown function; No homology to any previously reported sequences.	0.434
NIDE3573	NIDE3572	NIDE3573	NIDE3572	Putative Glutaredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.	Homologs of previously reported genes of unknown function.	0.617
NIDE3573	dcd	NIDE3573	NIDE3575	Putative Glutaredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.	2'-deoxycytidine 5'-triphosphate deaminase; Function of strongly homologous gene; enzyme.	0.457
NIDE3573	kamA	NIDE3573	NIDE3574	Putative Glutaredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.	L-lysine 2,3-aminomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.492
dcd	NIDE3572	NIDE3575	NIDE3572	2'-deoxycytidine 5'-triphosphate deaminase; Function of strongly homologous gene; enzyme.	Homologs of previously reported genes of unknown function.	0.432
dcd	NIDE3573	NIDE3575	NIDE3573	2'-deoxycytidine 5'-triphosphate deaminase; Function of strongly homologous gene; enzyme.	Putative Glutaredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.	0.457
dcd	kamA	NIDE3575	NIDE3574	2'-deoxycytidine 5'-triphosphate deaminase; Function of strongly homologous gene; enzyme.	L-lysine 2,3-aminomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.820
kamA	NIDE3572	NIDE3574	NIDE3572	L-lysine 2,3-aminomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Homologs of previously reported genes of unknown function.	0.446