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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grxDGlutaredoxin; Function of strongly homologous gene; enzyme. (108 aa)    
Predicted Functional Partners:
NIDE3583
Putative Protein BolA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the BolA/IbaG family.
 
 
 0.994
hscB
Co-chaperone protein HscB (Hsc20); Function of strongly homologous gene; factor.
     
 0.691
iscA
Iron-sulfur cluster assembly protein IscA; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the HesB/IscA family.
 
 0.657
erpA
Iron-sulfur cluster insertion protein erpA; Function of strongly homologous gene; factor; Belongs to the HesB/IscA family.
 
 0.632
erpA2
Iron-sulfur cluster insertion protein ErpA; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the HesB/IscA family.
 
 0.626
ubiA
4-hydroxybenzoate octaprenyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the UbiA prenyltransferase family.
  
     0.620
NIDE1401
Homologs of previously reported genes of unknown function.
  
  
 0.532
thrS
Threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
   
 
 0.525
NIDE3584
Exported protein of unknown function; No homology to any previously reported sequences.
       0.525
NIDE1895
Putative Iron-sulfur cluster assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the HesB/IscA family.
  
 0.521
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.