Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE3592Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (441 aa)    
Predicted Functional Partners:
NIDE3044
Putative Outer membrane protein assembly factor YaeT precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
 
 
 0.778
NIDE0867
Putative Surface antigen D15; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
    
 
 0.742
fbp
Peptidyl-prolyl cis-trans isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.736
fkpA
Peptidylprolyl isomerase, FKBP-type; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.736
NIDE2282
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.
   
 
 0.694
NIDE0853
Protein of unknown function, TPR-like; No homology to any previously reported sequences.
    
 
 0.692
NIDE3446
Homologs of previously reported genes of unknown function.
    
 
 0.692
NIDE3937
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences; 11867755, 14572631, 16234932.
  
     0.559
NIDE3313
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences.
  
     0.555
NIDE3519
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences; 14572631, 16234932, 16574144, 17227014, 1995346.
  
     0.550
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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