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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3592Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (441 aa)    
Predicted Functional Partners:
NIDE3937
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences; 11867755, 14572631, 16234932.
  
     0.559
NIDE3313
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences.
  
     0.555
NIDE3519
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences; 14572631, 16234932, 16574144, 17227014, 1995346.
  
     0.550
NIDE3593
Putative Hybrid sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.508
NIDE1185
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.480
NIDE3157
Conserved exported protein of unknown function, putative Porin; Homologs of previously reported genes of unknown function.
  
     0.463
NIDE1703
Homologs of previously reported genes of unknown function.
  
     0.427
NIDE0491
Homologs of previously reported genes of unknown function.
  
     0.418
tatA3
Twin-arginine translocation protein TatA3; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
     0.413
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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