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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3612Homologs of previously reported genes of unknown function. (414 aa)    
Predicted Functional Partners:
NIDE2584
Conserved exported protein of unknown function DUF1597; Homologs of previously reported genes of unknown function.
  
     0.731
NIDE0058
Homologs of previously reported genes of unknown function.
  
     0.704
NIDE3861
Homologs of previously reported genes of unknown function.
  
     0.666
NIDE3611
Homologs of previously reported genes of unknown function.
       0.648
NIDE1238
Squalene synthase; Function of strongly homologous gene; enzyme.
  
     0.565
NIDE3169
Putative Bacterioferritin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
     0.551
NIDE0690
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
     0.476
NIDE3614
Homologs of previously reported genes of unknown function.
       0.473
NIDE0146
Appr-1-p processing enzyme family protein; Function of strongly homologous gene; enzyme.
  
     0.459
NIDE3512
Putative di-haem Cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
     0.451
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.