STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yaeQHomologs of previously reported genes of unknown function; 9604894. (184 aa)    
Predicted Functional Partners:
NIDE1793
Exported protein of unknown function; No homology to any previously reported sequences.
   
    0.842
NIDE3501
Homologs of previously reported genes of unknown function.
   
    0.829
phoU
Phosphate transport system protein PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.769
lepB
Signal peptidase I; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the peptidase S26 family.
   
    0.703
NIDE3630
Homologs of previously reported genes of unknown function.
 
     0.646
cspB
Cold shock protein modulated with ribosomal subunit interface-like protein; Function of strongly homologous gene; factor.
  
    0.584
yfcH
Conserved protein of unknown function, NAD(P)-binding Rossmann-fold domain; Homologs of previously reported genes of unknown function.
   
    0.564
rpoN
RNA polymerase, sigma-54 (sigma N) factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
   
    0.562
NIDE3627
Homologs of previously reported genes of unknown function.
       0.505
yciH
Translation initiation factor 1; Function of homologous gene experimentally demonstrated in an other organism; factor.
       0.505
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.