STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3630Homologs of previously reported genes of unknown function. (72 aa)    
Predicted Functional Partners:
yaeQ
Homologs of previously reported genes of unknown function; 9604894.
 
     0.646
NIDE1878
Conserved protein of unknown function, radical SAM; Homologs of previously reported genes of unknown function; 14633981.
  
     0.635
yciH
Translation initiation factor 1; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
     0.529
NIDE3631
Conserved protein of unknown function, putative HNH endonuclease; Homologs of previously reported genes of unknown function; 17175542, 9358175.
       0.453
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.