STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3684Conserved protein of unknown function, possible Anti-sigma-K factor; Homologs of previously reported genes of unknown function; 9573603. (194 aa)    
Predicted Functional Partners:
sigK
RNA polymerase sigma factor SigK (Sigma-K); Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.928
NIDE1747
Putative RNA polymerase sigma factor, sigma-24 homolog; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.607
NIDE0204
Homologs of previously reported genes of unknown function.
     
 0.488
glbN
Hemoglobin-like protein HbN (modular protein); Function of strongly homologous gene; carrier.
       0.476
NIDE3687
Protein of unknown function; No homology to any previously reported sequences.
       0.440
NIDE0210
Putative Flavin-containing amine oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.400
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.