STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glbNHemoglobin-like protein HbN (modular protein); Function of strongly homologous gene; carrier. (158 aa)    
Predicted Functional Partners:
NIDE3687
Protein of unknown function; No homology to any previously reported sequences.
       0.705
NIDE0942
Exported protein of unknown function, OmpA family; No homology to any previously reported sequences.
      
 0.627
NIDE1954
Exported protein of unknown function, OmpA family; No homology to any previously reported sequences; 14763978, 1574003, 16475801, 2202726.
      
 0.627
NIDE2439
Putative Peptidoglycan-associated lipoprotein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
      
 0.627
NIDE3688
Putative Antitoxin YefM; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.596
NIDE3689
Putative Toxin YoeB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
       0.596
NIDE0670
Homologs of previously reported genes of unknown function.
      0.491
NIDE3684
Conserved protein of unknown function, possible Anti-sigma-K factor; Homologs of previously reported genes of unknown function; 9573603.
       0.476
sigK
RNA polymerase sigma factor SigK (Sigma-K); Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.476
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
      
 0.424
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.