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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3688Putative Antitoxin YefM; Antitoxin component of a type II toxin-antitoxin (TA) system. (98 aa)    
Predicted Functional Partners:
NIDE3689
Putative Toxin YoeB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
   
 
 0.839
NIDE2003
Addiction module toxin, Txe/YoeB family; Function of strongly homologous gene; cell process.
 
 
 0.706
yoeB
Addiction module toxin YoeB; Function of homologous gene experimentally demonstrated in an other organism; factor.
  
 
 0.669
NIDE3687
Protein of unknown function; No homology to any previously reported sequences.
       0.651
glbN
Hemoglobin-like protein HbN (modular protein); Function of strongly homologous gene; carrier.
       0.596
NIDE2501
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.583
NIDE3671
Restriction endonuclease, type II; Function of strongly homologous gene; enzyme.
  
     0.535
NIDE3690
Protein of unknown function; No homology to any previously reported sequences.
       0.483
vapC
Putative PilT-like protein, containing PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.432
NIDE1274
Putative Integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family.
  
     0.402
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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