Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE3738Putative Lytic murein transglycosylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (226 aa)    
Predicted Functional Partners:
pabB
Aminodeoxychorismate synthase, component I; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.571
NIDE3737
Putative Aminodeoxychorismate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.571
NIDE0265
Putative Outer membrane protein, OmpA/MotB family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
    0.550
NIDE0237
Exported protein of unknown function; No homology to any previously reported sequences; 16475801, 2202726.
 
    0.519
NIDE0266
Putative Outer membrane protein, OmpA/MotB family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
    0.494
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
 
      0.487
motB
Flagellar motor protein MotB; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
    0.481
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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