Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
NIDE3807Putative FeS assembly ATPase SufC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (242 aa)    
Predicted Functional Partners:
NIDE3808
Putative FeS assembly protein SufBD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
 
 0.999
iscU
Iron-sulfur cluster assembly protein IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
  
 0.907
NIDE3488
Homologs of previously reported genes of unknown function; 9600981.
 
  
 0.585
NIDE3805
Protein of unknown function; No homology to any previously reported sequences.
       0.521
NIDE3806
Protein of unknown function; No homology to any previously reported sequences.
       0.521
erpA
Iron-sulfur cluster insertion protein erpA; Function of strongly homologous gene; factor; Belongs to the HesB/IscA family.
  
 
 0.481
NIDE1895
Putative Iron-sulfur cluster assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the HesB/IscA family.
  
 
 0.481
erpA2
Iron-sulfur cluster insertion protein ErpA; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the HesB/IscA family.
  
 
 0.481
iscA
Iron-sulfur cluster assembly protein IscA; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the HesB/IscA family.
  
 
 0.481
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
   
 0.457
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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