Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
NIDE3812Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 14659697, 15361863, 16893176, 7667876, 9482716. (723 aa)    
Predicted Functional Partners:
NIDE3811
Homologs of previously reported genes of unknown function.
 
     0.902
NIDE0948
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 11777911, 14659697, 15223324, 1882418, 7667876, 9482716.
 
     0.758
NIDE2403
Homologs of previously reported genes of unknown function.
 
     0.753
NIDE2408
Putative Lipopolysaccharide biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.731
NIDE3274
Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 16893176, 7667876, 9482716.
 
     0.720
NIDE1061
Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function.
  
     0.656
NIDE3810
Conserved protein of unknown function, contains Ankyrin repeats; Homologs of previously reported genes of unknown function; 8108379.
       0.645
NIDE3813
Exported protein of unknown function; No homology to any previously reported sequences; 16339899, 2539596, 7519681.
       0.615
NIDE2406
Putative polysaccharide export protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.589
NIDE3673
Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 15451670, 1882418, 7667876, 9482716.
 
     0.576
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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