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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
higBToxin of plasmid maintenance system; Function of strongly homologous gene; extrachromosomal origin. (93 aa)    
Predicted Functional Partners:
higA
Antitoxin of plasmid maintenance system; Function of homologous gene experimentally demonstrated in an other organism; extrachromosomal origin.
 
 
 
 0.988
NIDE1720
Putative Antidote of proteic killer gene system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
 
 
 0.946
NIDE2142
Putative Antidote of proteic killer gene system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
 
 
 0.946
stbE
Addiction module toxin; Function of strongly homologous gene; cell process.
      
 0.752
yoeB
Addiction module toxin YoeB; Function of homologous gene experimentally demonstrated in an other organism; factor.
      
 0.744
yefM
Antitoxin of toxin-antitoxin stability system; Antitoxin component of a type II toxin-antitoxin (TA) system.
      
 0.706
yefM-2
Addiction module antitoxin yefM; Antitoxin component of a type II toxin-antitoxin (TA) system.
      
 0.706
mazF
Toxin MazF; Toxic component of a type II toxin-antitoxin (TA) system.
     
 0.700
NIDE2171
Ferrichrome iron receptor (fragment); Function of strongly homologous gene; transporter.
      
 0.657
fhuA
Ferrichrome iron receptor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.657
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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