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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3856Homologs of previously reported genes of unknown function. (226 aa)    
Predicted Functional Partners:
NIDE3855
Putative Acyl carrier protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
     0.802
NIDE3854
Putative Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase (E2) component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.773
NIDE0925
Conserved protein of unknown function, putative Protein kinase; Homologs of previously reported genes of unknown function.
  
     0.700
NIDE3857
Protein of unknown function; No homology to any previously reported sequences.
       0.613
NIDE3858
Protein of unknown function; No homology to any previously reported sequences.
       0.613
NIDE0923
Protein of unknown function; No homology to any previously reported sequences.
  
     0.595
pdhB
Pyruvate dehydrogenase E1 component, beta subunit (Transketolase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
       0.541
NIDE2213
Putative Acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.515
NIDE3859
Heat shock protein, Hsp20 family; Function of strongly homologous gene; factor; Belongs to the small heat shock protein (HSP20) family.
       0.445
pdhA
Pyruvate dehydrogenase E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
       0.442
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.