STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3884Putative Sulfite:cytochrome c oxidoreductase, subunit A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (391 aa)    
Predicted Functional Partners:
NIDE3882
Putative Multihaem cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
   
 
 0.937
NIDE3883
Putative Sulfite:cytochrome c oxidoreductase, subunit B; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
   
   0.815
NIDE3885
Conserved protein of unknown function, OsmC-like; Homologs of previously reported genes of unknown function; 15054099, 15103136, 15111059, 1715407, 8820643, 9573147.
       0.788
NIDE3886
Putative Quinol-cytochrome c reductase, cytochrome c subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
 
 
 0.709
NIDE3533
Conserved protein of unknown function, contains MOSC domain; Homologs of previously reported genes of unknown function; 16784786, 18312271.
 
   
 0.481
yedX
Transthyretin-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
   
   0.419
NIDE3881
Conserved protein of unknown function, DsrE-like; Homologs of previously reported genes of unknown function; 9695921.
       0.411
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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