STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3885Conserved protein of unknown function, OsmC-like; Homologs of previously reported genes of unknown function; 15054099, 15103136, 15111059, 1715407, 8820643, 9573147. (144 aa)    
Predicted Functional Partners:
NIDE3884
Putative Sulfite:cytochrome c oxidoreductase, subunit A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.788
NIDE3883
Putative Sulfite:cytochrome c oxidoreductase, subunit B; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
       0.773
NIDE3882
Putative Multihaem cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
       0.659
NIDE3886
Putative Quinol-cytochrome c reductase, cytochrome c subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
       0.532
NIDE3881
Conserved protein of unknown function, DsrE-like; Homologs of previously reported genes of unknown function; 9695921.
       0.490
NIDE3333
Putative HTH-type transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
    0.435
NIDE3918
Homologs of previously reported genes of unknown function.
 
    0.408
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.