STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3906Putative ABC-type transport system, auxiliary component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (215 aa)    
Predicted Functional Partners:
NIDE3907
Putative ABC-type transport system, periplasmic binding component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   0.972
NIDE3908
Putative ABC-type transport system, ATP binding component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.942
NIDE3909
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the MlaE permease family.
 
  
 0.857
NIDE3905
Conserved membrane protein of unknown function DUF125; Homologs of previously reported genes of unknown function.
       0.596
yrbD
ABC transporter, periplasmic binding component, putative ATP-dependent toluene efflux transporter; Function of strongly homologous gene; transporter.
  
   0.517
NIDE1505
Conserved protein of unknown function, putative ABC transporter, periplasmic binding component; Homologs of previously reported genes of unknown function.
  
   0.517
NIDE3911
Conserved membrane protein of unknown function, contains WD-40 repeat; Homologs of previously reported genes of unknown function; 11814058, 7481807, 8090199.
  
    0.512
NIDE3902
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.477
NIDE3903
Alpha-glucan phosphorylase; Function of strongly homologous gene; enzyme.
       0.477
NIDE3904
Glycosyl transferase, group 1; Function of strongly homologous gene; enzyme.
       0.477
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.