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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3910Homologs of previously reported genes of unknown function. (307 aa)    
Predicted Functional Partners:
NIDE3909
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the MlaE permease family.
       0.672
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.601
NIDE3911
Conserved membrane protein of unknown function, contains WD-40 repeat; Homologs of previously reported genes of unknown function; 11814058, 7481807, 8090199.
       0.568
NIDE3907
Putative ABC-type transport system, periplasmic binding component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
     
 0.503
NIDE2584
Conserved exported protein of unknown function DUF1597; Homologs of previously reported genes of unknown function.
  
   
 0.468
NIDE3912
Homologs of previously reported genes of unknown function; 8223548.
       0.462
NIDE1352
Putative Type IV pili biogenesis protein PilQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
   
  
 0.446
NIDE3908
Putative ABC-type transport system, ATP binding component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.446
NIDE0097
Homologs of previously reported genes of unknown function.
  
 
   0.423
NIDE3321
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.412
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.