Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE3944Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (410 aa)    
Predicted Functional Partners:
macB
ABC transporter, ATPase component, putative Macrolide export ATP-binding protein; Function of strongly homologous gene; enzyme.
 
 0.990
ybbA-2
ABC-type transport system, ATPase component; Function of strongly homologous gene; transporter.
 
 0.979
NIDE1090
ABC transporter, ATP-binding component, putative Lipoprotein-releasing system protein LolD; Function of strongly homologous gene; transporter.
 
 0.972
NIDE3943
RND-type efflux transporter, membrane-fusion protein; Function of strongly homologous gene; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.970
lolD
Lipoprotein-releasing system, ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 0.968
ybbA
Uncharacterized ABC-type transport system, ATPase component; Function of strongly homologous gene; enzyme.
 
 0.965
ybbA-3
ABC-type transport system, ATP-binding component; Function of strongly homologous gene; transporter.
 
 
 0.958
ftsE
Cell division protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
    
 0.910
macA
Efflux transporter, RND family, MFP subunit, putative Macrolide-specific efflux protein; Function of strongly homologous gene; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.881
yrbF
ABC transporter, ATPase component, putative ATP-dependent toluene efflux transporter; Function of strongly homologous gene; enzyme.
 
      0.870
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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