STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3959Protein of unknown function, contains CBS domain pair; No homology to any previously reported sequences; 15326606, 9020585. (258 aa)    
Predicted Functional Partners:
NIDE1839
Conserved protein of unknown function, contains CBS domain pair; Homologs of previously reported genes of unknown function; 15326606, 9020585.
  
     0.631
NIDE3960
Homologs of previously reported genes of unknown function.
       0.607
maf
Septum formation protein Maf-like; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.527
NIDE3957
Putative tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.527
NIDE3958
Homologs of previously reported genes of unknown function.
       0.527
NIDE3961
Conserved protein of unknown function, putative Phosphohydrolase; Homologs of previously reported genes of unknown function.
       0.422
NIDE3962
Putative Rhomboid serine protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.409
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.