STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
NIDE3962Putative Rhomboid serine protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (234 aa)    
Predicted Functional Partners:
NIDE2972
Putative N-acetylmuramoyl-L-alanine amidase AmiB precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
   0.789
NIDE3961
Conserved protein of unknown function, putative Phosphohydrolase; Homologs of previously reported genes of unknown function.
       0.759
NIDE3960
Homologs of previously reported genes of unknown function.
       0.578
tatA-2
Twin arginine-targeting protein translocase, TatA/E family (modular protein); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.543
tatA
Twin-arginine translocation protein TatA/E; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.543
tatA-3
Putative Twin-arginine translocation protein TatA2; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.543
tatA3
Twin-arginine translocation protein TatA3; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.543
NIDE1252
Homologs of previously reported genes of unknown function.
   
 0.446
hflK
FtsH protease activity modulator HflK; HflC and HflK could encode or regulate a protease.
   
 0.446
hflC
FtsH protease activity modulator HflC; HflC and HflK could regulate a protease.
   
 0.446
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.