Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3970Protein of unknown function; No homology to any previously reported sequences. (263 aa)    
Predicted Functional Partners:
NIDE1036
ABC transporter, periplasmic binding component, putative Fe3+ transport system; Function of strongly homologous gene; transporter.
   
   0.755
NIDE3969
Putative ABC-type transport system, ATPase and permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.598
NIDE3173
Putative Glycoside hydrolase, family 20; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.568
NIDE3968
Putative ABC-type transport system, ATPase and permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.452
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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