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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3975Protein of unknown function; No homology to any previously reported sequences. (91 aa)    
Predicted Functional Partners:
gapD
Succinate semialdehyde dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the aldehyde dehydrogenase family.
       0.747
NIDE3976
Exported protein of unknown function, putative DsbA-like oxidoreductase; No homology to any previously reported sequences; 2181145, 2668278, 3371540, 3896121, 7635143, 7788289, 7788290, 7940678, 9149147, 9655827.
       0.643
NIDE3977
Putative Deoxyhypusine synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.625
pdaD
Arginine decarboxylase, pyruvoyl-dependent; Function of strongly homologous gene; enzyme.
       0.468
speB
Agmatinase; Function of strongly homologous gene; enzyme; Belongs to the arginase family.
       0.410
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.