STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4050Protein of unknown function UPF0153; No homology to any previously reported sequences. (209 aa)    
Predicted Functional Partners:
NIDE4049
Protein of unknown function; No homology to any previously reported sequences.
       0.821
NIDE4069
Protein of unknown function UPF0153; No homology to any previously reported sequences.
  
     0.661
NIDE1150
Uncharacterized protein; Homologs of previously reported genes of unknown function; 14722619, 9478130; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
    0.585
NIDE4048
Protein of unknown function; No homology to any previously reported sequences.
       0.578
NIDE1351
Putative Type IV pilus assembly protein PilP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.542
NIDE1703
Homologs of previously reported genes of unknown function.
  
     0.496
hupB
Transcriptional dual regulator HU-beta; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the bacterial histone-like protein family.
       0.464
NIDE2033
Conserved protein of unknown function, contains ATC domains; Homologs of previously reported genes of unknown function.
  
     0.443
NIDE2026
Conserved exported protein of unknown function, DUF400; Homologs of previously reported genes of unknown function.
 
    0.439
flgD
Flagellar hook capping protein FlgD (fragment); Function of homologous gene experimentally demonstrated in an other organism; structure.
   
   0.428
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.