Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccpA2Cytochrome c peroxidase; Function of strongly homologous gene; enzyme. (365 aa)    
Predicted Functional Partners:
phoB
Phosphate regulon transcriptional regulator PhoB; Function of strongly homologous gene; regulator.
      
 0.731
rpoN
RNA polymerase, sigma-54 (sigma N) factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
      
 0.623
NIDE4059
Exported protein of unknown function; No homology to any previously reported sequences.
       0.511
NIDE4063
Conserved protein of unknown function, putative Saccharopine dehydrogenase; Homologs of previously reported genes of unknown function.
       0.486
NIDE4061
Protein of unknown function; No homology to any previously reported sequences.
       0.481
NIDE4062
Aldehyde dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the aldehyde dehydrogenase family.
     
 0.480
phoU
Phosphate transport system protein PhoU; Plays a role in the regulation of phosphate uptake.
   
  
 0.435
NIDE4058
Exported protein of unknown function; No homology to any previously reported sequences.
       0.416
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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