STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4073Homologs of previously reported genes of unknown function. (555 aa)    
Predicted Functional Partners:
NIDE2197
Putative Periplasmic chaperone Skp; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
 
 
 0.579
NIDE4072
Exported protein of unknown function; No homology to any previously reported sequences.
       0.559
NIDE3042
Putative Outer membrane chaperone Skp precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
    
 
 0.500
NIDE3043
Putative Outer membrane chaperone Skp precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
    
 
 0.500
tatA-3
Putative Twin-arginine translocation protein TatA2; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.487
NIDE3796
O-methyltransferase, family 2; Function of strongly homologous gene; enzyme.
  
     0.454
NIDE4259
Homologs of previously reported genes of unknown function.
  
     0.409
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.