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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4079Putative ABC-type transport system, ATPase and permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (564 aa)    
Predicted Functional Partners:
NIDE3966
Putative Efflux transporter, membrane fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.855
NIDE3967
Putative Outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.803
msbA-3
Lipid A export ATP-binding/permease protein MsbA; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
0.544
msbA
Lipid A export ATP-binding/permease protein MsbA; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
0.543
msbA-2
Lipid A export ATP-binding/permease protein MsbA; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
0.524
NIDE4080
Glycosyl transferase, family 2; Function of strongly homologous gene; enzyme.
  
    0.508
NIDE4081
Homologs of previously reported genes of unknown function.
       0.498
NIDE4082
Putative Glycosyl transferase, family 39; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.498
NIDE2435
Putative Phosphate-selective porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.440
NIDE4078
Probable membrane transporter protein; Homologs of previously reported genes of unknown function.
       0.421
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.