Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4090Protein of unknown function; No homology to any previously reported sequences. (340 aa)    
Predicted Functional Partners:
NIDE4091
Putative Type IV pilus assembly protein PilY1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
       0.817
ybeY
Conserved protein of unknown function, putative Metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.599
phoL
PhoH-like protein; Function of strongly homologous gene; putative enzyme.
       0.599
NIDE4092
Exported protein of unknown function; No homology to any previously reported sequences.
       0.561
NIDE4093
Putative Type IV pilus assembly protein PilX; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
       0.558
NIDE4094
Putative Type IV pilus assembly protein PilW; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
       0.525
ftsY
Cell division protein ftsY homolog; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.494
NIDE4207
Putative Glycosyl transferase, family 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.494
NIDE1096
Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function; 14659697, 1882418, 7667876, 9482716.
  
     0.491
NIDE4095
Putative Type IV pilus assembly protein PilV; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
       0.480
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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