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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4137Protein of unknown function; No homology to any previously reported sequences. (110 aa)    
Predicted Functional Partners:
dat-2
D-amino-acid transaminase; Function of strongly homologous gene; enzyme.
       0.764
NIDE4138
Putative 2Fe-2S ferredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
       0.682
NIDE4139
Conserved exported protein of unknown function DUF192; Homologs of previously reported genes of unknown function.
       0.635
yhbC
Conserved protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
       0.568
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
       0.498
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
       0.434
NIDE4132
Homologs of previously reported genes of unknown function.
       0.408
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.