Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NIDE4139Conserved exported protein of unknown function DUF192; Homologs of previously reported genes of unknown function. (165 aa)    
Predicted Functional Partners:
NIDE4138
Putative 2Fe-2S ferredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
       0.749
NIDE4137
Protein of unknown function; No homology to any previously reported sequences.
       0.630
dat-2
D-amino-acid transaminase; Function of strongly homologous gene; enzyme.
       0.575
yfhL
4Fe-4S ferredoxin; Function of strongly homologous gene; carrier.
       0.524
yhbC
Conserved protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
       0.408
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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