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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4147Conserved protein of unknown function, Bilin biosynthesis protein-like; Homologs of previously reported genes of unknown function; 16819590, 7550332, 8132596, 8855320, 902317, 9023176, 9882677. (253 aa)    
Predicted Functional Partners:
NIDE4148
Conserved protein of unknown function, contains HEAT-like repeats; Homologs of previously reported genes of unknown function; 7550332, 8132596, 8425055, 9023176, 9882677.
 
    
0.873
NIDE4146
Protein of unknown function, contains HEAT-like repeat; No homology to any previously reported sequences; 9882677.
 
    
0.812
NIDE1653
Protein of unknown function, contains PBS lyase HEAT-like repeats; No homology to any previously reported sequences; 16819590, 8132596, 9023176, 9882677.
  
     0.754
NIDE4149
Conserved protein of unknown function, Bilin biosynthesis protein-like; Homologs of previously reported genes of unknown function; 16819590, 8132596, 9023176, 9882677.
 
    
0.726
NIDE2640
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 15189147, 1882418, 7667876, 7748903, 8690703, 9482716.
  
     0.571
NIDE1288
Protein of unknown function, contains HEAT-like repeats; No homology to any previously reported sequences; 7550332, 8132596, 9882677.
 
    
0.522
NIDE4150
Conserved protein of unknown function, contains HEAT-like repeats; Homologs of previously reported genes of unknown function; 8132596, 9023176, 9882677.
 
    
0.484
efp
Elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.474
NIDE1198
Protein of unknown function, contains HEAT-like repeats; No homology to any previously reported sequences; 8132596, 9882677, 9989501.
 
    
0.410
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.