STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpsLUDP-glucuronate 5'-epimerase; Function of strongly homologous gene; enzyme. (340 aa)    
Predicted Functional Partners:
udg-2
UDP-glucose 6-dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.934
udg
UDP-glucose 6-dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.930
NIDE2888
NAD-dependent epimerase/dehydratase; Function of strongly homologous gene; enzyme.
     
 
0.900
rfbF
Glucose-1-phosphate cytidylyltransferase; Function of strongly homologous gene; enzyme.
  
  0.836
galU
UTP--glucose-1-phosphate uridylyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.820
NIDE3904
Glycosyl transferase, group 1; Function of strongly homologous gene; enzyme.
   
 
  0.803
otsA1
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.800
otsA2
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.800
NIDE2831
UDP-glucose/GDP-mannose dehydrogenase family protein; Function of strongly homologous gene; enzyme; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.664
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.641
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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