Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4181Exported protein of unknown function; No homology to any previously reported sequences. (340 aa)    
Predicted Functional Partners:
NIDE4180
Conserved protein of unknown function, YceI-like; Homologs of previously reported genes of unknown function; ; Belongs to the UPF0312 family.
       0.774
NIDE4182
Protein of unknown function; No homology to any previously reported sequences.
       0.773
tdh
L-threonine 3-dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.527
exbD
Biopolymer transport protein exbD; Function of strongly homologous gene; transporter.
  
 
 0.470
exbD-2
Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.470
exbD3
Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.470
tolR
Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.470
exbB
Biopolymer transport protein exbB; Function of strongly homologous gene; transporter.
  
 
 0.417
exbB-2
Biopolymer transport protein ExbB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.417
exbB3
Biopolymer transport protein ExbB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.417
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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