NIDE4181 protein (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NIDE4181

Exported protein of unknown function; No homology to any previously reported sequences. (340 aa)

Predicted Functional Partners:

NIDE4180

0.776

NIDE4182

0.773

NIDE2671

0.741

exbD

0.583

exbD-2

0.583

exbD3

0.583

tolR

0.583

tdh

0.534

exbB

0.513

exbB-2

0.513

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NIDE2671	NIDE4181	NIDE2671	NIDE4181	Putative Vitamin B12 transporter BtuB precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Exported protein of unknown function; No homology to any previously reported sequences.	0.741
NIDE2671	tolR	NIDE2671	NIDE3362	Putative Vitamin B12 transporter BtuB precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.422
NIDE4180	NIDE4181	NIDE4180	NIDE4181	Conserved protein of unknown function, YceI-like; Homologs of previously reported genes of unknown function; ; Belongs to the UPF0312 family.	Exported protein of unknown function; No homology to any previously reported sequences.	0.776
NIDE4180	NIDE4182	NIDE4180	NIDE4182	Conserved protein of unknown function, YceI-like; Homologs of previously reported genes of unknown function; ; Belongs to the UPF0312 family.	Protein of unknown function; No homology to any previously reported sequences.	0.773
NIDE4180	tdh	NIDE4180	NIDE4183	Conserved protein of unknown function, YceI-like; Homologs of previously reported genes of unknown function; ; Belongs to the UPF0312 family.	L-threonine 3-dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.550
NIDE4181	NIDE2671	NIDE4181	NIDE2671	Exported protein of unknown function; No homology to any previously reported sequences.	Putative Vitamin B12 transporter BtuB precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.741
NIDE4181	NIDE4180	NIDE4181	NIDE4180	Exported protein of unknown function; No homology to any previously reported sequences.	Conserved protein of unknown function, YceI-like; Homologs of previously reported genes of unknown function; ; Belongs to the UPF0312 family.	0.776
NIDE4181	NIDE4182	NIDE4181	NIDE4182	Exported protein of unknown function; No homology to any previously reported sequences.	Protein of unknown function; No homology to any previously reported sequences.	0.773
NIDE4181	exbB	NIDE4181	NIDE0646	Exported protein of unknown function; No homology to any previously reported sequences.	Biopolymer transport protein exbB; Function of strongly homologous gene; transporter.	0.513
NIDE4181	exbB-2	NIDE4181	NIDE1033	Exported protein of unknown function; No homology to any previously reported sequences.	Biopolymer transport protein ExbB; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.513
NIDE4181	exbD	NIDE4181	NIDE0647	Exported protein of unknown function; No homology to any previously reported sequences.	Biopolymer transport protein exbD; Function of strongly homologous gene; transporter.	0.583
NIDE4181	exbD-2	NIDE4181	NIDE1032	Exported protein of unknown function; No homology to any previously reported sequences.	Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.583
NIDE4181	exbD3	NIDE4181	NIDE2167	Exported protein of unknown function; No homology to any previously reported sequences.	Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.583
NIDE4181	tdh	NIDE4181	NIDE4183	Exported protein of unknown function; No homology to any previously reported sequences.	L-threonine 3-dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.534
NIDE4181	tolR	NIDE4181	NIDE3362	Exported protein of unknown function; No homology to any previously reported sequences.	Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.583
NIDE4182	NIDE4180	NIDE4182	NIDE4180	Protein of unknown function; No homology to any previously reported sequences.	Conserved protein of unknown function, YceI-like; Homologs of previously reported genes of unknown function; ; Belongs to the UPF0312 family.	0.773
NIDE4182	NIDE4181	NIDE4182	NIDE4181	Protein of unknown function; No homology to any previously reported sequences.	Exported protein of unknown function; No homology to any previously reported sequences.	0.773
NIDE4182	tdh	NIDE4182	NIDE4183	Protein of unknown function; No homology to any previously reported sequences.	L-threonine 3-dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.516
exbB	NIDE4181	NIDE0646	NIDE4181	Biopolymer transport protein exbB; Function of strongly homologous gene; transporter.	Exported protein of unknown function; No homology to any previously reported sequences.	0.513
exbB	exbD	NIDE0646	NIDE0647	Biopolymer transport protein exbB; Function of strongly homologous gene; transporter.	Biopolymer transport protein exbD; Function of strongly homologous gene; transporter.	0.996