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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4185Putative VacJ-like lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein. (312 aa)    
Predicted Functional Partners:
NIDE0994
Homologs of previously reported genes of unknown function.
   
 
 0.836
NIDE1028
Homologs of previously reported genes of unknown function.
   
 
 0.836
NIDE0866
Putative ABC transporter, auxiliary component, putative ATP-dependent toluene efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 
 0.835
NIDE3827
Putative Toluene tolerance-type auxiliary component of ABC-type transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 
 0.827
yrbD
ABC transporter, periplasmic binding component, putative ATP-dependent toluene efflux transporter; Function of strongly homologous gene; transporter.
 
   
 0.780
NIDE1452
Protein of unknown function; No homology to any previously reported sequences.
 
 
 
 0.670
NIDE4186
Protein of unknown function; No homology to any previously reported sequences.
       0.623
NIDE1483
Putative toluene tolerance; Homologs of previously reported genes of unknown function; 9658016.
 
 
 
 0.615
NIDE4187
Putative Peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.559
NIDE4188
Homologs of previously reported genes of unknown function.
       0.537
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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