STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4247Putative Cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (157 aa)    
Predicted Functional Partners:
qcrB
Quinol-cytochrome c reductase, fused cytochrome b/c subunit; Function of strongly homologous gene; carrier.
  
 
 0.951
NIDE3882
Putative Multihaem cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
 
 
 0.819
NIDE0905
Protein of unknown function, putative Cytochrome c; No homology to any previously reported sequences; 3881803.
 
 
 0.817
nuoCD
NADH-quinone oxidoreductase, subunits C and D; Function of homologous gene experimentally demonstrated in an other organism; enzyme; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
   0.755
NIDE4246
Protein of unknown function; No homology to any previously reported sequences.
       0.733
NIDE4267
Homologs of previously reported genes of unknown function.
  
     0.702
NIDE0817
Homologs of previously reported genes of unknown function.
  
     0.685
NIDE3794
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.685
NIDE3312
Homologs of previously reported genes of unknown function; 11278909.
  
     0.684
NIDE3936
Homologs of previously reported genes of unknown function.
  
     0.684
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.