STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4295Exported protein of unknown function, putative Staphylococcal nuclease; No homology to any previously reported sequences; 17172296, 1896431, 8045422, 9041650. (209 aa)    
Predicted Functional Partners:
NIDE4294
Protein of unknown function; No homology to any previously reported sequences.
       0.560
NIDE1759
Homologs of previously reported genes of unknown function.
 
     0.557
NIDE1129
Homologs of previously reported genes of unknown function; 9724625.
 
   
 0.522
NIDE3206
Exported protein of unknown function, putative Tyrosinase; No homology to any previously reported sequences; 1901488, 8939424, 9846879.
  
     0.509
phd
Antitoxin of toxin-antitoxin system; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.477
stbE
Addiction module toxin; Function of strongly homologous gene; cell process.
       0.477
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
   0.427
NIDE1618
Homologs of previously reported genes of unknown function.
  
     0.416
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.