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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4309Conserved protein of unknown function, 23S rRNA-associated protein-like; Homologs of previously reported genes of unknown function; 7751314, 8341711. (118 aa)    
Predicted Functional Partners:
NIDE4100
Protein of unknown function; No homology to any previously reported sequences.
  
  
 0.714
ybgC
Acyl-CoA thioesterase; Function of strongly homologous gene; enzyme.
       0.678
NIDE4310
Homologs of previously reported genes of unknown function.
  
    0.615
pilC
Type IV pilus biogenesis protein PilC; Function of strongly homologous gene; transporter.
  
  
 0.602
gspF
General secretion pathway protein F; Function of strongly homologous gene; transporter.
  
  
 0.602
NIDE2734
Putative Competence protein ComEC/Rec2 related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.597
gspE2
General secretion pathway protein E, contains GAF domain; Function of strongly homologous gene; transporter.
  
 
 0.578
gspE
General secretion pathway protein E; Function of strongly homologous gene; transporter.
  
 
 0.578
NIDE4097
Putative Type IV pilus assembly protein PilB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
 
 0.578
pilD
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.509
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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