Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE4372Conserved membrane protein of unknown function DUF1295; Homologs of previously reported genes of unknown function. (264 aa)    
Predicted Functional Partners:
NIDE0210
Putative Flavin-containing amine oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     0.948
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     0.855
NIDE0211
Conserved protein of unknown function, DUF1365; Homologs of previously reported genes of unknown function.
 
     0.801
NIDE0208
Homologs of previously reported genes of unknown function.
      0.649
NIDE1203
Putative 2-hydroxy-6-ketonona-2,4-dienedioate hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
      0.611
NIDE4373
Putative Cytochrome c55x; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
       0.500
phr
Deoxyribodipyrimidine photolyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DNA photolyase family.
 
     0.463
NIDE0213
Homologs of previously reported genes of unknown function.
 
     0.418
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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