Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4385Homologs of previously reported genes of unknown function. (165 aa)    
Predicted Functional Partners:
NIDE4388
Homologs of previously reported genes of unknown function; Belongs to the UPF0753 family.
  
  
 0.738
ydiU
Conserved protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
       0.725
NIDE1770
Homologs of previously reported genes of unknown function; Belongs to the UPF0753 family.
  
  
 0.613
NIDE4386
Putative NADH-quinone oxidoreductase, subunit L; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.541
NIDE4383
Homologs of previously reported genes of unknown function.
       0.411
NIDE4382
Putative Carboxylesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.401
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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