STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE4388Homologs of previously reported genes of unknown function; Belongs to the UPF0753 family. (1089 aa)    
Predicted Functional Partners:
glnB-3
Nitrogen regulatory protein P-II; Function of strongly homologous gene; regulator.
 
     0.922
NIDE4386
Putative NADH-quinone oxidoreductase, subunit L; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.911
NIDE4387
Putative NADH-quinone oxidoreductase, subunit M; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.819
NIDE1769
Putative NADH-quinone oxidoreductase, subunit L (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.816
glnB-2
Nitrogen regulatory protein P-II; Function of strongly homologous gene; regulator.
 
     0.780
NIDE4385
Homologs of previously reported genes of unknown function.
  
  
 0.738
nuoL
NADH-quinone oxidoreductase, membrane subunit L; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.622
nuoL-2
NADH-quinone oxidoreductase, membrane subunit L; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.622
NIDE1094
Putative ABC transporter, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.465
NIDE3313
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences.
  
     0.416
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.