STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIZ36525.1Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)    
Predicted Functional Partners:
AIZ37002.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.833
AIZ37003.1
General secretion pathway protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.824
AIZ36791.1
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.808
AIZ36550.1
N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.743
ssb
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
  
 0.593
selD
Segregation protein B; Synthesizes selenophosphate from selenide and ATP.
       0.555
AIZ36758.1
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.546
AIZ36523.1
Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.521
selA
Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
       0.521
AIZ36527.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.515
Your Current Organism:
Parvimonas micra
NCBI taxonomy Id: 33033
Other names: ATCC 33270, CCUG 17638, CCUG 17638 A, CCUG 46357, CIP 105294, DSM 20468, Diplococcus glycinophilus, JCM 12970, KCTC 5196, NCTC 11808, P. micra, Peptococcus glycinophilus, Peptostreptococcus micros, Streptococcus anaerobius micros, Streptococcus micros, VPI 5464, strain 3119B
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