Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIZ36640.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (352 aa)    
Predicted Functional Partners:
ligA
NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.732
AIZ36642.1
ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.732
AIZ36643.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
dacA
Membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
       0.566
rpmB
50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.
       0.550
Your Current Organism:
Parvimonas micra
NCBI taxonomy Id: 33033
Other names: ATCC 33270, CCUG 17638, CCUG 17638 A, CCUG 46357, CIP 105294, DSM 20468, Diplococcus glycinophilus, JCM 12970, KCTC 5196, NCTC 11808, P. micra, Peptococcus glycinophilus, Peptostreptococcus micros, Streptococcus anaerobius micros, Streptococcus micros, VPI 5464, strain 3119B
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