Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KWZ77754.1 | KWZ77755.1 | HMPREF3200_01225 | HMPREF3200_01226 | Hypothetical protein. | Hypothetical protein. | 0.866 |
KWZ77754.1 | KWZ77756.1 | HMPREF3200_01225 | HMPREF3200_01227 | Hypothetical protein. | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. | 0.721 |
KWZ77754.1 | KWZ77996.1 | HMPREF3200_01225 | HMPREF3200_01045 | Hypothetical protein. | KEGG: apr:Apre_0675 0. DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97. | 0.950 |
KWZ77754.1 | KWZ78963.1 | HMPREF3200_01225 | HMPREF3200_00445 | Hypothetical protein. | Hypothetical protein; KEGG: apr:Apre_1126 4.6e-92 DNA polymerase III gamma/tau subunits-like protein; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 7.50. | 0.809 |
KWZ77754.1 | dnaX | HMPREF3200_01225 | HMPREF3200_01452 | Hypothetical protein. | DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.809 |
KWZ77754.1 | priA | HMPREF3200_01225 | HMPREF3200_01289 | Hypothetical protein. | Primosomal protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.930 |
KWZ77754.1 | rplJ | HMPREF3200_01225 | HMPREF3200_00722 | Hypothetical protein. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.722 |
KWZ77754.1 | rplU | HMPREF3200_01225 | HMPREF3200_01322 | Hypothetical protein. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.744 |
KWZ77754.1 | rpsF | HMPREF3200_01225 | HMPREF3200_00906 | Hypothetical protein. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.776 |
KWZ77754.1 | topA | HMPREF3200_01225 | HMPREF3200_00390 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.880 |
KWZ77755.1 | KWZ77754.1 | HMPREF3200_01226 | HMPREF3200_01225 | Hypothetical protein. | Hypothetical protein. | 0.866 |
KWZ77755.1 | KWZ77756.1 | HMPREF3200_01226 | HMPREF3200_01227 | Hypothetical protein. | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. | 0.926 |
KWZ77756.1 | KWZ77754.1 | HMPREF3200_01227 | HMPREF3200_01225 | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. | Hypothetical protein. | 0.721 |
KWZ77756.1 | KWZ77755.1 | HMPREF3200_01227 | HMPREF3200_01226 | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. | Hypothetical protein. | 0.926 |
KWZ77996.1 | KWZ77754.1 | HMPREF3200_01045 | HMPREF3200_01225 | KEGG: apr:Apre_0675 0. DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97. | Hypothetical protein. | 0.950 |
KWZ77996.1 | KWZ78963.1 | HMPREF3200_01045 | HMPREF3200_00445 | KEGG: apr:Apre_0675 0. DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97. | Hypothetical protein; KEGG: apr:Apre_1126 4.6e-92 DNA polymerase III gamma/tau subunits-like protein; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 7.50. | 0.994 |
KWZ77996.1 | dnaX | HMPREF3200_01045 | HMPREF3200_01452 | KEGG: apr:Apre_0675 0. DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97. | DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.995 |
KWZ77996.1 | topA | HMPREF3200_01045 | HMPREF3200_00390 | KEGG: apr:Apre_0675 0. DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.449 |
KWZ78963.1 | KWZ77754.1 | HMPREF3200_00445 | HMPREF3200_01225 | Hypothetical protein; KEGG: apr:Apre_1126 4.6e-92 DNA polymerase III gamma/tau subunits-like protein; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 7.50. | Hypothetical protein. | 0.809 |
KWZ78963.1 | KWZ77996.1 | HMPREF3200_00445 | HMPREF3200_01045 | Hypothetical protein; KEGG: apr:Apre_1126 4.6e-92 DNA polymerase III gamma/tau subunits-like protein; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 7.50. | KEGG: apr:Apre_0675 0. DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97. | 0.994 |
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